Projects/laydi
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85 Commits

Author SHA1 Message Date
Truls Alexander Tangstad 5b1af849dc Implemented Limma function for Affy workflow. 
Extended ScatterPlot to take two datasets and updated code using it.
 2006-05-09 13:17:17 +00:00
Reidar Strand Hagen 033d4d5333 removed reorderability 2006-05-09 13:00:16 +00:00
Reidar Strand Hagen 184a49ef9a fixed ordering of multiple selected datasets 2006-05-09 12:22:50 +00:00
Truls Alexander Tangstad 0db25f1dd7 Changed use of Dataset.get_matrix() to Dataset.asarray() and removed it. 2006-05-05 14:43:53 +00:00
Truls Alexander Tangstad 97f56f66ac Added text-input for contrast-matrix creator for affymetrics workflow. 2006-05-05 14:30:23 +00:00
Truls Alexander Tangstad 98445498b5 If argument 'selection' exists in function.run, pass current selection to it. 2006-05-05 13:10:54 +00:00
Truls Alexander Tangstad aa3a9ab619 Added automagic argument checking when running functions. 2006-05-05 10:10:03 +00:00
Truls Alexander Tangstad 9f7ee74189 Replaced function as button-attribute with lambda as button click handler. 2006-05-04 15:32:59 +00:00
Reidar Strand Hagen 338778d7b1 Functions which doesn't require inputs will now run with data selected 2006-05-03 14:47:55 +00:00
Truls Alexander Tangstad b757da5929 Implemented PhenotypeDataset with tests. 2006-05-03 14:04:28 +00:00
Reidar Strand Hagen 56a6028547 Validation on number of inputs added 2006-05-03 11:52:54 +00:00
Truls Alexander Tangstad a613f0a3fa Made scatter use the new methods for index/identifier-conversion. 2006-05-03 11:40:12 +00:00
Reidar Strand Hagen 5b2223afcd Multiselection included. (Without input validation). 2006-05-03 11:11:45 +00:00
Truls Alexander Tangstad 91c1d8ea8b Fixed getting empty selections. 2006-05-02 15:40:54 +00:00
Truls Alexander Tangstad 56c07c6392 Implemented Dataset.get_indices() and extended Dataset.get_identifiers() to convert between indices and identifiers and subsets thereof. 
Also added tests.
 2006-05-02 14:06:48 +00:00
Truls Alexander Tangstad 2db1fc774e Removed whitespace. 2006-05-02 13:14:07 +00:00
Reidar Strand Hagen e363f1cd7d Signals for drag'n'drop added to new plots 2006-05-02 12:38:00 +00:00
Reidar Strand Hagen 4e4150236f Drag'n'drop for plots 2006-05-02 11:09:55 +00:00
Truls Alexander Tangstad a2d3a9d5cc Made PCA more generic, even enable PCA of existing PCA-results as dimension names are modified to handle dimension name component in input. 2006-04-28 11:44:55 +00:00
Reidar Strand Hagen fa3b1182bc Added font/bg colours to Navigator. (uses coloumns 3,4 in TreeModel, set in projects.py) 2006-04-27 15:51:25 +00:00
Truls Alexander Tangstad 5bb93af6f0 Changed generic observer pattern and project dependency in plots to be a two-way selection-listener model. 
The project listens to selections done in plot and broadcasts it back to all plots (including source) which allows them to redraw properly.
 2006-04-27 14:38:48 +00:00
Reidar Strand Hagen c6ef6cdb07 Added auto-expand and auto-commit 2006-04-27 14:15:13 +00:00
Einar Ryeng 0df56248ee Removed obsolete module annotations. 2006-04-27 12:41:51 +00:00
Truls Alexander Tangstad 06805aa5e4 Changed colormap for LinePlot. 2006-04-27 12:05:20 +00:00
Truls Alexander Tangstad 3683f6c2e9 Fixed labels for scatter plots. Set correct labels in go_workflow. Removed extra loadings plot. 2006-04-27 11:38:40 +00:00
Einar Ryeng 60c1d19a74 Get correct path for glade file based on the path of the system package. 2006-04-27 11:20:12 +00:00
Truls Alexander Tangstad 969006015a Added LinePlot used by Affy importer. 2006-04-27 11:03:11 +00:00
Einar Ryeng c95c18eb14 fluents.glade is now read from '/system/' under the directory of argv[0]. 2006-04-27 10:54:18 +00:00
Einar Ryeng a92be02e80 Added help index and bug report menu options. 2006-04-27 09:55:19 +00:00
Einar Ryeng 2b0fdc186c Fiexd the cancel button of the new project dialog. Closes #7 2006-04-26 14:01:46 +00:00
Einar Ryeng a0ad4bdf54 Fixed logger bugs. Closes #6 2006-04-26 13:29:10 +00:00
Einar Ryeng a9947daf14 Removed debug print statements. 2006-04-26 12:57:00 +00:00
Truls Alexander Tangstad 21edeecdc3 Add toolbar support to plots, with home made selection support <phew>. 2006-04-26 12:11:23 +00:00
Einar Ryeng 490038d9bf Refreshing workflows now works. 2006-04-25 18:06:21 +00:00
Einar Ryeng 251f9d6cf4 Added command line options to create a new project based on a given workflow. 2006-04-25 12:19:25 +00:00
Einar Ryeng 16820cf29e The refresh button in the toolbar reloads the currently active workflow module. 2006-04-25 10:46:06 +00:00
Truls Alexander Tangstad 9d7a5ba769 Optimized plot selection. 2006-04-25 10:08:12 +00:00
Einar Ryeng 359903c5ab Made system a package. 2006-04-25 09:53:35 +00:00
Einar Ryeng 32fdca837a Moved the generation of workflow list from dialogs.py to workflow.py, as 
a step in the process of making command line options to the program.
 2006-04-24 21:52:18 +00:00
Einar Ryeng ba2a769f01 Function names are now folders in the navigator. 2006-04-24 15:20:27 +00:00
Einar Ryeng 179a2f88a9 The navigator now displays the plots and data in a tree that shows the ancestry information. 2006-04-24 14:52:21 +00:00
Truls Alexander Tangstad 6c72dec7fa Removed need to provide plots with project/workflow on creation, is instead injected by project itself when added to it. 2006-04-24 14:42:45 +00:00
Truls Alexander Tangstad b807f27874 Fixed deselection in scatterplot. 2006-04-24 14:28:30 +00:00
Truls Alexander Tangstad 3fb7d06f4e Fixed problem with plots accumulating. 2006-04-24 14:25:24 +00:00
Truls Alexander Tangstad 97e09b39a1 Added matrix-getter to Dataset. 
Added rma-function to preprocessing incorporated in AffyMatrix-importer.
Added PCAFunction to go_workflow for processing loaded affymatrix data.
 2006-04-24 14:07:34 +00:00
Truls Alexander Tangstad 2bddb22867 Fixed navigator after changes in Dataset. 2006-04-24 11:39:11 +00:00
Arnar Flatberg 6356e2ebd6 get_dim_names and get_identifiers added in dataset 2006-04-24 11:23:30 +00:00
Arnar Flatberg a2e4392a72 Complete rewrite of dataset class, with (all) the necessary updates 2006-04-24 09:53:07 +00:00
Einar Ryeng 53d0228074 * Added the full text of the GNU GPL. 2006-04-22 22:46:10 +00:00
Einar Ryeng e762aef882 * system/dialogs.py: Oooops. Forgot this file in the previous commits. Well, 
here it is, currently only with the New Project dialog.
 2006-04-22 22:29:02 +00:00