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38 Commits

Author SHA1 Message Date
Arnar Flatberg 502cd22dc8 2006-10-10 15:23:35 +00:00
Arnar Flatberg 7940e51867 added copy 2006-10-06 10:19:19 +00:00
Einar Ryeng fb1ab3e4e9 Fixed a bug in NetworkDataset. 2006-10-03 21:05:41 +00:00
Arnar Flatberg c370d9d250 copy() added to dataset. Does deepcopy. deepcopy issue fixed in ReverseDict 2006-09-16 10:36:57 +00:00
Einar Ryeng e0ca48d4b3 Changed how the selection list works. CategoryDatasets can be dragged down to 
the selection list, and will then be converted to Selections.
 2006-09-08 18:25:03 +00:00
Arnar Flatberg 0b58c5ea28 Switch to numpy (scipy_version>1.0) changes 2006-08-31 10:04:19 +00:00
Arnar Flatberg b000792faa Added method: as_selections() to CategoryDataset 2006-08-30 12:37:08 +00:00
Einar Ryeng 1b9aff1c5a The selection view now works. Functions can return a dataset.Selection object which will be stored in the selection list. 2006-08-29 23:57:21 +00:00
Arnar Flatberg 97e652edce fixes 2006-08-28 12:06:05 +00:00
Arnar Flatberg b14dc3c9c2 Added from_file and to_file 2006-08-13 11:35:12 +00:00
Arnar Flatberg bbd525bed0 Added reversedict and updated get_dentifiers and get_indices 2006-08-08 08:05:26 +00:00
Arnar Flatberg 677d368b60 Added category dataset 2006-08-08 07:54:00 +00:00
Einar Ryeng b769288b3b Added a selection view tab, placed next to the "Log" tab. The tab currently 
only displays the current selection.
 2006-08-07 14:14:42 +00:00
Einar Ryeng b3d681ef16 * system/plots.py: Added NetworkPlot, which may or may not work correctly. 
* system/dataset.py: Removed a few lines of obsolete code.
 2006-08-01 13:22:39 +00:00
Arnar Flatberg 37b4d55a86 2006-08-01 11:01:52 +00:00
Arnar Flatberg a55a872399 fix output for indices is empty array 2006-08-01 10:53:44 +00:00
Arnar Flatberg 27472defda bugfix in get_identifiers 2006-08-01 10:33:45 +00:00
Arnar Flatberg 676ea4e0b9 removed shape in constructor, added all_dims to dataset base class, updated get_identifiers and get_indices 
Denne linjen og de som er under vil bli ignorert--

M    dataset.py
 2006-08-01 09:45:53 +00:00
Einar Ryeng 87f87e36c8 * system/fluents.py: Fixed a bug where the the application tried to load 
a toolbar from None

 * system/plots.py: Fixed MainView.insert_view that was a no-op when in large
   view.

 * system/dataset.py: Changed __str__ of dataset to also show names of dimensions.
 2006-07-21 14:30:09 +00:00
Truls Alexander Tangstad 0db25f1dd7 Changed use of Dataset.get_matrix() to Dataset.asarray() and removed it. 2006-05-05 14:43:53 +00:00
Truls Alexander Tangstad b757da5929 Implemented PhenotypeDataset with tests. 2006-05-03 14:04:28 +00:00
Truls Alexander Tangstad 91c1d8ea8b Fixed getting empty selections. 2006-05-02 15:40:54 +00:00
Truls Alexander Tangstad 56c07c6392 Implemented Dataset.get_indices() and extended Dataset.get_identifiers() to convert between indices and identifiers and subsets thereof. 
Also added tests.
 2006-05-02 14:06:48 +00:00
Einar Ryeng 359903c5ab Made system a package. 2006-04-25 09:53:35 +00:00
Truls Alexander Tangstad 97e09b39a1 Added matrix-getter to Dataset. 
Added rma-function to preprocessing incorporated in AffyMatrix-importer.
Added PCAFunction to go_workflow for processing loaded affymatrix data.
 2006-04-24 14:07:34 +00:00
Arnar Flatberg 6356e2ebd6 get_dim_names and get_identifiers added in dataset 2006-04-24 11:23:30 +00:00
Arnar Flatberg a2e4392a72 Complete rewrite of dataset class, with (all) the necessary updates 2006-04-24 09:53:07 +00:00
Truls Alexander Tangstad d26dd54f5b Label verifier bugged when having generated labels. 2006-04-22 17:30:10 +00:00
Truls Alexander Tangstad e4831ada13 Now can get and set name in Dataset. Also added getter for dim_names. 2006-04-21 12:28:29 +00:00
Arnar Flatberg 7851048fb6 workflow update 2006-04-21 08:34:08 +00:00
Arnar Flatberg 2e53626393 s 2006-04-21 08:29:43 +00:00
Arnar Flatberg 800e7dc42e New pca workflow and datset updates 2006-04-20 15:30:29 +00:00
Arnar Flatberg 6a4ae8ecf1 mainly overhaul of observers, and removal of project singleton 2006-04-20 10:27:58 +00:00
Arnar Flatberg 0eebd9436c object selection fix 2006-04-19 18:50:10 +00:00
Arnar Flatberg 1091bea0e9 category data and plot selection update| 2006-04-19 10:37:44 +00:00
Arnar Flatberg a8937ededb mainly play in plots 2006-04-18 14:25:46 +00:00
Arnar Flatberg 2f2d54e5c8 op 2006-04-17 09:08:40 +00:00
Arnar Flatberg 23fb12f53a First commit 2006-04-16 22:57:50 +00:00