Some adjustements for lineplot
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@ -8,11 +8,13 @@ from matplotlib.backends.backend_gtkagg import FigureCanvasGTKAgg as FigureCanva
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from matplotlib.backends.backend_gtkagg import NavigationToolbar2GTK as NavigationToolbar2
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from matplotlib.axes import Subplot
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from matplotlib.figure import Figure
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from matplotlib.numerix import arange, sin, pi
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from matplotlib.widgets import RectangleSelector
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from matplotlib import cm
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from matplotlib import cm,cbook
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from pylab import Polygon
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from matplotlib.collections import LineCollection
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from matplotlib.mlab import prctile
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import networkx
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from system import logger
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from itertools import izip
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class ObjectTable:
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@ -428,15 +430,39 @@ class LineViewPlot(Plot):
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minor_axis = major_axis-1
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#initial draw
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self.line_collection = {}
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x_axis = scipy.arrayrange(self._data.shape[minor_axis])
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for i in range(self._data.shape[major_axis]):
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yi = self._data.take([i],major_axis)
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if self.use_blit:
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l,=self.ax.plot(x_axis,yi,'k',alpha=.05,animated=True)
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else:
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l,=self.ax.plot(x_axis,yi,'k',alpha=.05)
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self.line_collection[i] = l
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x_axis = scipy.arange(self._data.shape[minor_axis])
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self.line_segs=[]
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for xi in range(self._data.shape[major_axis]):
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yi = self._data.take([xi],major_axis)
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self.line_segs.append([(xx,yy) for xx,yy in izip(x_axis,yi)])
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#background
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xax = scipy.arange(self._data.shape[0])
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verts_0 = [] #100,0
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verts_1 = [] # 90,10
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verts_2 = [] # 75,25
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med = []
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for i in xax:
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pp = prctile(self._data[i,:],[0.,5.,25,50.,75.,95.,100])
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verts_0.append((i,pp[0]))
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verts_1.append((i,pp[1]))
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verts_2.append((i,pp[2]))
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for i in xax[::-1]:
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pp = prctile(self._data[i,:],[0.,5.,25,50.,75.,95.,100])
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verts_0.append((i,pp[-1]))
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verts_1.append((i,pp[-2]))
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verts_2.append((i,pp[-3]))
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med.append(pp[3])
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bck0 = Polygon(verts_0,alpha=.15,lw=0)
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bck1 = Polygon(verts_1,alpha=.15,lw=0)
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bck2 = Polygon(verts_2,alpha=.15,lw=0)
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self.ax.add_patch(bck0)
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self.ax.add_patch(bck1)
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self.ax.add_patch(bck2)
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self.ax.plot(xax,med,'b')
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self.ax.autoscale_view()
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self.add(self.canvas)
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self.canvas.show()
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@ -463,26 +489,17 @@ class LineViewPlot(Plot):
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self._background = self.canvas.copy_from_bbox(self.ax.bbox)
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self.canvas.restore_region(self._background)
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if index:
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if self._last_index:
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for i in self._last_index:
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# if not using blit: reset last selection
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self.ax.lines[i].set_color('k')
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self.ax.lines[i].set_alpha(.05)
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self.ax.lines[i].set_zorder(1)
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for i in index:
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self.ax.lines[i].set_color('r')
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self.ax.lines[i].set_alpha(1.0)
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self.ax.lines[i].set_visible(True)
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self.ax.lines[i].set_zorder(3)
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if self.use_blit:
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self.ax.draw_artist(self.ax.lines[i])
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self._last_index = index
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if self.use_blit:
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if len(index)>0: # do we have a selection
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if len(self.ax.collections)>0:
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self.ax.collections = []
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segs = [self.line_segs[i] for i in index]
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line_coll = LineCollection(segs,colors=(1,0,0,1))
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if self.use_blit:
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self.ax.draw_artist(line_coll)
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self.canvas.blit()
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else:
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self.ax.add_collection(line_coll)
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#self.ax.autoscale_view()
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self.canvas.draw()
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class ScatterMarkerPlot(Plot):
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@ -491,8 +508,8 @@ has no color and size options."""
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def __init__(self, dataset_1, dataset_2, id_dim, sel_dim, id_1, id_2,s=6, name="Scatter plot"):
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Plot.__init__(self, name)
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self.ax = self.fig.add_subplot(111)
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self.ax.axhline(0,color='k',lw=1.5,zorder=0)
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self.ax.axvline(0,color='k',lw=1.5,zorder=0)
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self.ax.axhline(0,color='k',lw=1.,zorder=1)
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self.ax.axvline(0,color='k',lw=1.,zorder=1)
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self.current_dim = id_dim
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self.dataset_1 = dataset_1
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self.ms = s
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@ -558,7 +575,11 @@ has no color and size options."""
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self.xaxis_data = dataset_1._array[:,x_index]
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self.yaxis_data = dataset_2._array[:,y_index]
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lw = scipy.zeros(self.xaxis_data.shape)
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self.ax.scatter(self.xaxis_data,self.yaxis_data,s=s,c=c,linewidth=lw,edgecolor='k',alpha=.6,cmap = cm.Set1)
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sc = self.ax.scatter(self.xaxis_data,self.yaxis_data,s=s,c=c,linewidth=lw,edgecolor='k',alpha=.6,cmap = cm.jet)
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if len(c)>1:
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self.fig.colorbar(sc,ticks=[],fraction=.05)
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self.ax.axhline(0,color='k',lw=1.,zorder=1)
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self.ax.axvline(0,color='k',lw=1.,zorder=1)
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self.ax.set_title(self.get_title())
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# collection
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self.coll = self.ax.collections[0]
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@ -594,9 +615,12 @@ has no color and size options."""
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def set_current_selection(self, selection):
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ids = selection[self.current_dim] # current identifiers
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if len(ids)==0:
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return
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index = self.dataset_1.get_indices(self.current_dim, ids)
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lw = scipy.zeros(self.xaxis_data.shape)
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scipy.put(lw,index,2.)
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if len(index)>0:
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lw.put(2.,index)
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self.coll.set_linewidth(lw)
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self._toolbar.forward() #update data lims before draw
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self.canvas.draw()
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@ -682,7 +706,8 @@ class NetworkPlot(Plot):
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x1, x2 = x2, x1
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if y1 > y2:
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y1, y2 = y2, y1
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index = scipy.nonzero((xdata>x1) & (xdata<x2) & (ydata>y1) & (ydata<y2))
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index = scipy.nonzero((xdata>x1) & (xdata<x2) & (ydata>y1) & (ydata<y2))[0]
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ids = [node_ids[i] for i in index[0]]
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self.selection_listener(self.dataset.get_dim_name(0), ids)
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