Projects/laydi
Projects
/
laydi
Archived
7
0
Fork 0

Added Workflow.get_data_file_name() which returns the full path to a given

data file, or None if the file does not exist. This is tested in the test
workflow.
This commit is contained in:
Einar Ryeng 2007-02-28 14:56:24 +00:00
parent 934640ea62
commit 89636962a7
2 changed files with 30 additions and 0 deletions

View File

@ -63,6 +63,19 @@ class Workflow:
self.stages_by_id = {} self.stages_by_id = {}
self.app = app self.app = app
def get_data_file_name(self, filename):
"""Checks if a file with the given name exists in the data directory.
Returns the file name if the file exists in the data directory, which
is defined as datadir/workflowname. If the file does not exist, or the
workflow does not have an identificator, this method returns None."""
print os.path.join(self.app.options.datadir, self.ident, filename)
if self.ident == None:
return None
fn = os.path.join(self.app.options.datadir, self.ident, filename)
if os.path.isfile(fn):
return fn
return None
def add_stage(self, stage): def add_stage(self, stage):
self.stages.append(stage) self.stages.append(stage)
self.stages_by_id[stage.id] = stage self.stages_by_id[stage.id] = stage

View File

@ -17,6 +17,7 @@ class TestWorkflow (workflow.Workflow):
load = workflow.Stage('load', 'Load Data') load = workflow.Stage('load', 'Load Data')
load.add_function(CelFileImportFunction()) load.add_function(CelFileImportFunction())
load.add_function(DataLoadTestFunction(self))
load.add_function(TestDataFunction()) load.add_function(TestDataFunction())
load.add_function(DatasetLoadFunction()) load.add_function(DatasetLoadFunction())
load.add_function(SelectFunction()) load.add_function(SelectFunction())
@ -257,6 +258,22 @@ class CelFileImportFunction(workflow.Function):
chooser.destroy() chooser.destroy()
class DataLoadTestFunction(workflow.Function):
def __init__(self, wf):
workflow.Function.__init__(self, 'datadirload', 'Load from datadir')
self._wf = wf
def run(self):
print self._wf.get_data_file_name('smoker-x.ftsv')
fn = self._wf.get_data_file_name('smoker-x.ftsv')
if fn:
fd = open(fn)
ds = dataset.read_ftsv(fd)
return [ds]
else:
print "Cannot find file %s" % fn
return []
class PCAFunction(workflow.Function): class PCAFunction(workflow.Function):
"""Generic PCA function.""" """Generic PCA function."""
def __init__(self, wf): def __init__(self, wf):