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FIXING STUFF!

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Rename should be complete or almost so.
This commit is contained in:
Einar Ryeng
2008-12-05 22:07:56 +00:00
parent 1eabbc5c48
commit 7e6bac20e1
42 changed files with 148 additions and 148 deletions
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10
workflows/smokers.py
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@@ -3,8 +3,8 @@ import os.path
import webbrowser
import cPickle
from fluents import logger, plots,workflow,dataset,main
from fluents.lib import blmfuncs,nx_utils,validation,engines,cx_stats,cx_utils
from laydi import logger, plots,workflow,dataset,main
from laydi.lib import blmfuncs,nx_utils,validation,engines,cx_stats,cx_utils
import gobrowser, geneontology
import scipy
import networkx as nx
@@ -103,7 +103,7 @@ class DatasetLoadFunctionCYCLE(workflow.Function):
workflow.Function.__init__(self, 'load_data', 'Cycle')
def run(self):
filename='fluents/data/CYCLE'
filename='laydi/data/CYCLE'
if filename:
return dataset.from_file(filename)
@@ -419,7 +419,7 @@ class MapGene2GO(workflow.Function):
workflow.Function.__init__(self, 'gene2go', 'gene->GO')
# load data at init
try:
fname = "/home/flatberg/fluents/data/gene2go.pcl"
fname = "/home/flatberg/laydi/data/gene2go.pcl"
self._gene2go = cPickle.load(open(fname))
except:
logger.log("notice", "could not load mapping")
@@ -451,7 +451,7 @@ class MapGO2Gene(workflow.Function):
workflow.Function.__init__(self, 'go2gene', 'GO->gene')
# load data at init
try:
fname = "/home/flatberg/fluents/data/go2gene.pcl"
fname = "/home/flatberg/laydi/data/go2gene.pcl"
self._go2gene = cPickle.load(open(fname))
except:
logger.log("notice", "could not load mapping")