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workflow update

This commit is contained in:
Arnar Flatberg 2006-04-21 08:34:08 +00:00
parent aa6f598f87
commit 7851048fb6
2 changed files with 4 additions and 2 deletions
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1
system/dataset.py
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@ -46,6 +46,7 @@ class Dataset:
def __str__(self): def __str__(self):
self.name = 'Arnar' self.name = 'Arnar'
return self.name return self.name
def names(self,axis=0): def names(self,axis=0):
"""Returns identifier names of a dimension. """Returns identifier names of a dimension.
NB: sorted by values! NB: sorted by values!

5
workflows/pca_workflow.py
View File

@ -64,8 +64,9 @@ class LoadAnnotationsFunction(Function):
logger.log('debug','Some identifers in data does not exist in affy file!') logger.log('debug','Some identifers in data does not exist in affy file!')
for affy_id,description in annot: for affy_id,description in annot:
if affy_id in ids_in_data: if affy_id in ids_in_data:
pathways = desc[i_want]: pathways = description[i_want]
if not pathways[0][0]=='--': if not pathways[0][0]=='--':
pass