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get_dim_names and get_identifiers added in dataset

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Arnar Flatberg
2006-04-24 11:23:30 +00:00
parent a2e4392a72
commit 6356e2ebd6
2 changed files with 19 additions and 14 deletions
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11
workflows/pca_workflow.py
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@@ -93,13 +93,12 @@ class PCAFunction(Function):
singel_def = ('1',('s'))
# pull out input identifiers:
data_ids = []
for dim in data:
data_ids.append((dim,data[dim].keys()))
row_ids = data.get_identifiers('genes')
col_ids = data.get_identifiers('samples')
T = dataset.Dataset(T,(data_ids[0],comp_def))
P = dataset.Dataset(P,[data_ids[1],comp_def])
E = dataset.Dataset(E,data_ids)
T = dataset.Dataset(T,[('samples',col_ids) ,comp_def])
P = dataset.Dataset(P,[('genes',row_ids),comp_def])
E = dataset.Dataset(E,[('samples',col_ids),'genes',(row_ids)])
#tsq = dataset.Dataset(tsq,[singel_def,data_ids[1])
## plots