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Multiselection included. (Without input validation).

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This commit is contained in:
Reidar Strand Hagen
2006-05-03 11:11:45 +00:00
parent 91c1d8ea8b
commit 5b2223afcd
5 changed files with 68 additions and 31 deletions
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6
workflows/affy_workflow.py
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@@ -73,6 +73,8 @@ class DatasetSaveFunction(workflow.Function):
if not data:
logger.log("notice", "No data to save.")
return
else:
data = data[0]
chooser = gtk.FileChooserDialog(title="Save pickled data...", parent=None,
action=gtk.FILE_CHOOSER_ACTION_SAVE,
@@ -101,7 +103,7 @@ class CelFileImportFunction(workflow.Function):
def __init__(self):
workflow.Function.__init__(self, 'cel_import', 'Import Affy')
def run(self, data):
def run(self, (data,)):
import rpy
chooser = gtk.FileChooserDialog(title="Select cel files...", parent=None,
action=gtk.FILE_CHOOSER_ACTION_OPEN,
@@ -150,7 +152,7 @@ class PCAFunction(workflow.Function):
workflow.Function.__init__(self, 'pca', 'PCA')
self._workflow = wf
def run(self, data):
def run(self, (data,)):
import rpy
dim_2, dim_1 = data.get_dim_names()

11
workflows/go_workflow.py
View File

@@ -81,7 +81,7 @@ class GODistanceFunction(workflow.Function):
workflow.Function.__init__(self, 'go_diatance', 'GO Distances')
self.output = None
def run(self, data):
def run(self, (data,)):
logger.log('debug', 'datatype: %s' % type(data))
if not type(data) == Annotations:
return None
@@ -108,7 +108,7 @@ class DatasetLog(workflow.Function):
def __init__(self):
workflow.Function.__init__(self, 'log', 'Log')
def run(self, data):
def run(self, (data,)):
logger.log('notice', 'Taking the log of dataset %s' % data.get_name())
d = data.asarray()
d = log(d)
@@ -151,7 +151,8 @@ class DatasetSaveFunction(workflow.Function):
if not data:
logger.log("notice", "No data to save.")
return
else:
data = data[0]
chooser = gtk.FileChooserDialog(title="Save pickled data...", parent=None,
action=gtk.FILE_CHOOSER_ACTION_SAVE,
buttons=(gtk.STOCK_CANCEL, gtk.RESPONSE_CANCEL,
@@ -179,7 +180,7 @@ class CelFileImportFunction(workflow.Function):
def __init__(self):
workflow.Function.__init__(self, 'cel_import', 'Import Affy')
def run(self, data):
def run(self, (data,)):
import rpy
chooser = gtk.FileChooserDialog(title="Select cel files...", parent=None,
action=gtk.FILE_CHOOSER_ACTION_OPEN,
@@ -228,7 +229,7 @@ class PCAFunction(workflow.Function):
workflow.Function.__init__(self, 'pca', 'PCA')
self._workflow = wf
def run(self, data):
def run(self, (data,)):
import rpy
dim_2, dim_1 = data.get_dim_names()

8
workflows/pca_workflow.py
View File

@@ -49,7 +49,7 @@ class LoadAnnotationsFunction(Function):
logger.log('notice', 'Reading file: %s' % dialog.get_filename())
self.load_affy_file(dialog.get_filename())
def run(self, data):
def run(self, (data,)):
btns = ('Open', gtk.RESPONSE_OK, \
'Cancel', gtk.RESPONSE_CANCEL)
dialog = gtk.FileChooserDialog('Open Affy Annotation File',
@@ -81,7 +81,7 @@ class PCAFunction(Function):
self.output = None
self.workflow = workflow
def run(self, data):
def run(self, (data,)):
logger.log('debug', 'datatype: %s' % type(data))
if not isinstance(data,dataset.Dataset):
return None
@@ -226,7 +226,7 @@ class LoadMoothaData(Function):
def __init__(self):
Function.__init__(self, 'load', 'Load diabetes data')
def run(self,data):
def run(self,(data,)):
data_file = open('full_data.pickle','r')
data = pickle.load(data_file)
data_file.close()
@@ -250,7 +250,7 @@ class Log2Function(Function):
def __init__(self):
Function.__init__(self, 'log', 'Log2')
def run(self,data):
def run(self,(data,)):
x = log2(data._array)
#pull out identifiers
ids = []