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working test ... for real

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This commit is contained in:
Arnar Flatberg
2007-09-03 16:16:39 +00:00
parent 9a296f59f6
commit 5a1e225a08
2 changed files with 22 additions and 24 deletions
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18
workflows/test_workflow.py
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@@ -2,7 +2,7 @@ import gtk
from fluents import dataset, logger, plots, workflow
#import geneontology
#import gostat
from scipy import array, randn, log, ones
from scipy import array, randn, log, ones, newaxis
import cPickle
import networkx
@@ -31,8 +31,8 @@ class TestDataTask(workflow.Task):
logger.log('notice', 'Injecting foo test data')
x = randn(500,15)
X = dataset.Dataset(x)
p = plots.ScatterPlot(X, X, 'rows', 'rows', '0_1', '0_2',name='scatter')
# p2 = plots.ScatterMarkerPlot(X, X, 'rows', 'rows', '0_1', '0_2',name='marker')
dname = X.get_dim_name()[0]
p = plots.ScatterPlot(X, X, dname, dname, '0_1', '0_2',name='scatter')
graph = networkx.XGraph()
for x in 'ABCDEF':
for y in 'ADE':
@@ -41,13 +41,12 @@ class TestDataTask(workflow.Task):
ds_plot = plots.NetworkPlot(ds)
cds = dataset.CategoryDataset(ones([3, 3]))
ds_scatter = plots.ScatterMarkerPlot(ds, ds,
'rows_0', 'rows_0',
'0_1', '0_2')
lp = plots.LineViewPlot(X,major_axis=0)
dname2 = cds.get_dim_name()[0]
ds_scatter = plots.ScatterMarkerPlot(cds, cds, dname2, dname2, '0_1', '0_2')
lp = plots.LineViewPlot(X ,major_axis=0)
vp = plots.VennPlot()
self.datasets = [p]
return [X, ds, p, ds_plot, ds_scatter, p2, cds, lp, vp]
return [X, ds, p, ds_plot, ds_scatter, cds, lp, vp]
class TestPlot(workflow.Task):
@@ -60,6 +59,7 @@ class TestPlot(workflow.Task):
logger.log('notice', 'Injecting foo test data')
x = randn(500,15)
X = dataset.Dataset(x)
p = plots.ScatterPlot(X, X, 'rows', 'rows', '0_1', '0_2',name='scatter')
ii = X.get_dim_name()
p = plots.ScatterPlot(X, X, ii[0], ii[0], '0_1', '0_2',name='scatter')
return [p]