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Validation on number of inputs added

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This commit is contained in:
Reidar Strand Hagen
2006-05-03 11:52:54 +00:00
parent a613f0a3fa
commit 56a6028547
6 changed files with 52 additions and 43 deletions
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16
workflows/go_workflow.py
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@@ -65,7 +65,7 @@ class LoadAnnotationsFunction(workflow.Function):
logger.log('notice', 'Reading file: %s' % dialog.get_filename())
self.load_file(dialog.get_filename())
def run(self, data):
def run(self):
btns = ('Open', gtk.RESPONSE_OK, \
'Cancel', gtk.RESPONSE_CANCEL)
dialog = gtk.FileChooserDialog('Open GO Annotation File',
@@ -81,7 +81,7 @@ class GODistanceFunction(workflow.Function):
workflow.Function.__init__(self, 'go_diatance', 'GO Distances')
self.output = None
def run(self, (data,)):
def run(self, data):
logger.log('debug', 'datatype: %s' % type(data))
if not type(data) == Annotations:
return None
@@ -98,7 +98,7 @@ class TestDataFunction(workflow.Function):
def __init__(self):
workflow.Function.__init__(self, 'test_data', 'Generate Test Data')
def run(self, data):
def run(self):
logger.log('notice', 'Injecting foo test data')
x = randn(20,30)
X = dataset.Dataset(x)
@@ -108,7 +108,7 @@ class DatasetLog(workflow.Function):
def __init__(self):
workflow.Function.__init__(self, 'log', 'Log')
def run(self, (data,)):
def run(self, data):
logger.log('notice', 'Taking the log of dataset %s' % data.get_name())
d = data.asarray()
d = log(d)
@@ -121,7 +121,7 @@ class DatasetLoadFunction(workflow.Function):
def __init__(self):
workflow.Function.__init__(self, 'load_data', 'Load Pickled Dataset')
def run(self, data):
def run(self):
chooser = gtk.FileChooserDialog(title="Select cel files...", parent=None,
action=gtk.FILE_CHOOSER_ACTION_OPEN,
buttons=(gtk.STOCK_CANCEL, gtk.RESPONSE_CANCEL,
@@ -147,7 +147,7 @@ class DatasetSaveFunction(workflow.Function):
def __init__(self):
workflow.Function.__init__(self, 'save_data', 'Save Pickled Dataset')
def run(self, data):
def run(self):
if not data:
logger.log("notice", "No data to save.")
return
@@ -180,7 +180,7 @@ class CelFileImportFunction(workflow.Function):
def __init__(self):
workflow.Function.__init__(self, 'cel_import', 'Import Affy')
def run(self, (data,)):
def run(self, data):
import rpy
chooser = gtk.FileChooserDialog(title="Select cel files...", parent=None,
action=gtk.FILE_CHOOSER_ACTION_OPEN,
@@ -229,7 +229,7 @@ class PCAFunction(workflow.Function):
workflow.Function.__init__(self, 'pca', 'PCA')
self._workflow = wf
def run(self, (data,)):
def run(self, data):
import rpy
dim_2, dim_1 = data.get_dim_names()