* Added selection directories. The selection/ directory in a project

should contain subdirectories per dimension. Selections are files within
  these subdirectories ending in .sel
* Renamed Universe.__getent__ to Universe.__getitem__

laydi/project.py

@@ -123,7 +123,7 @@ class Universe(object):
         else:
             self.unregister_dim(obj)
 
-    def __getent___(self, dimname):
+    def __getitem___(self, dimname):
         return set(self.references[dimname].keys())
 
     def __iter__(self):
@@ -160,11 +160,18 @@ class Dimension(object):
         return iter(self.idlist)
 
     def intersection(self, dim):
-        return self.idset.intersection(dim.idset)
+        if self.name != dim.name:
+            return None
+        return Dimension(self.name, self.idset.intersection(dim.idset))
 
     def as_tuple(self):
         return (self.name, self.idlist)
 
+    def verify(self):
+        for i in self.idlist:
+            if " " in i or "\t" in i:
+                raise Exception("Invalid identifier: %s" % i)
+
 
 class Directory(object):
     def __init__(self, path):
@@ -277,10 +284,113 @@ class DataDirectory(Directory):
         filepath = os.path.join(self.path, fn)
         
 
-class SelectionDirectory(object):
+class SelectionParentDirectory(Directory):
-    def __init__(self, dirname):
+    def __init__(self, dirname, project):
+        self.project = project
+        self.handlers = {}
+        Directory.__init__(self, dirname)
+
+    def dimensions(self):
+        return self.handlers.keys()
+
+    def __getitem__(self, key):
+        return self.handlers[key]
+
+    def file_created(self, fn):
         pass
 
+    def file_changed(self, fn):
+        pass
+
+    def file_removed(self, fn):
+        pass
+
+    def dir_created(self, fn):
+        print("dir_created: %s" % fn)
+        dimname = os.path.split(fn)[-1]
+        self.handlers[dimname] = SelectionDirectory(os.path.join(self.path, fn), dimname, self.project)
+
+    def dir_removed(self, fn):
+        print("dir_removed: %s" % fn)
+        dimname = os.path.split(fn)[-1]
+        removed = self.handlers.pop(dimname)
+
+    def update(self):
+        Directory.update(self)
+        for e in self.handlers.values():
+            e.update()
+
+
+class SelectionDirectory(Directory):
+    def __init__(self, fn, dimname, project):
+        self.project = project
+        self.dimension = dimname
+        self.selections = {}
+        Directory.__init__(self, fn)
+
+    def read_selection_file(self, fn):
+        """Reads a selection file and returns the corresponding Dimension object.
+
+        Warnings are printed to terminal on duplicated ids and invalid ids.
+        """
+        fd = open(fn)
+        ids = []
+        for line in fd.readlines():
+            e = line.strip()
+            if e.startswith("#") or e == "":
+                continue
+            ids.append(e)
+        fd.close()
+        return Dimension(self.dimname, ids)
+
+    def file_created(self, fn):
+        """Called from update() when new files are created.
+
+           Load new datasets that have appeared since last update.
+        """
+        print "loading selection: %s [%s]" % (fn, self.dimension)
+        filepath = os.path.join(self.path, fn)
+        name, ext = os.path.splitext(fn)
+        if ext == ".sel":
+            sel = read_selection_files(fn)
+            self.dsfiles[fn] = ds
+
+    def file_changed(self, fn):
+        """Called from update() when files are changed.
+
+           Delete old dataset and load the new one when dataset files 
+           have been changed.
+        """
+        filepath = os.path.join(self.path, fn)
+        name, ext = os.path.splitext(fn)
+        if ext == ".ftsv":
+            oldds = self.dsfiles[fn]
+            self.datasets.remove(oldds)
+            
+            ds = dataset.read_ftsv(filepath)
+            self.datasets.append(ds)
+
+            self.dsfiles[fn] = ds
+
+    def file_removed(self, fn):
+        """Called from update() when a file is deleted
+
+           Removes the associated dataset if a dataset file is removed.
+        """
+        filepath = os.path.join(self.path, fn)
+        name, ext = os.path.splitext(fn)
+        if ext == ".ftsv":
+            ds = self.dsfiles[fn]
+            self.datasets.remove(ds)
+            self.dsfiles.pop(fn)
+
+    def dir_created(self, fn):
+        """Called from update() when a subdirectory is created.
+
+           Instantiate new handlers for the directory if possible.
+        """
+        filepath = os.path.join(self.path, fn)
+
 
 class AnnotationDirectory(Directory):
     def __init__(self, dirname, project):
@@ -314,8 +424,10 @@ class Project(object):
         
         self.data = DataDirectory(self.datadir, self)
         self.annotations = AnnotationDirectory(self.anndir, self)
+        self.selections = SelectionParentDirectory(self.seldir, self)
 
     def update(self):
         print "updating project"
         self.data.update()
+        self.selections.update()