iups

scripts/lpls/rpy_go.py

@@ -1,6 +1,5 @@
 """ Module for Gene ontology related functions called in R"""
 import scipy
-
 import rpy
 silent_eval = rpy.with_mode(rpy.NO_CONVERSION, rpy.r)
 
@@ -126,3 +125,8 @@ def parents_dag(go_terms, ontology=['BP']):
             else:
                 edge_dict[nn] = [head]
     return edge_dict
+
+def gene_GO_hypergeo_test(genelist, universe, ontology = ['BP']):
+    
+    pvals = geneGoHyperGeoTest(entrezGeneIds, lib=None, ontology=ontology[0], universe=universe)
+    return pvals