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Changed use of Dataset.get_matrix() to Dataset.asarray() and removed it.

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Truls Alexander Tangstad
2006-05-05 14:43:53 +00:00
parent 97f56f66ac
commit 0db25f1dd7
4 changed files with 4 additions and 8 deletions
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4
system/plots.py
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@@ -386,7 +386,7 @@ class LinePlot(Plot):
import rpy
silent_eval = rpy.with_mode(rpy.NO_CONVERSION, rpy.r)
rpy.with_mode(rpy.NO_CONVERSION, rpy.r.assign)("m", dataset.get_matrix())
rpy.with_mode(rpy.NO_CONVERSION, rpy.r.assign)("m", dataset.asarray())
ymin, ymax = rpy.r("range(m)*1.1")
self._ymin, self._ymax = ymin, ymax
silent_eval("res <- apply(m, 2, density, from=%s, to=%s)" % (ymin, ymax))
@@ -420,7 +420,7 @@ class LinePlot(Plot):
ids = selection[dim_2] # current identifiers
index = [ind for id,ind in self._dataset[dim_2].items() if id in ids] #conversion to index
for i in index:
line = self._dataset.get_matrix()[i]
line = self._dataset.asarray()[i]
self.ax.plot(range(1, len(line)+1), line)
self.ax.set_xlim((0.5, cols+0.5))