laydi/test/system/annotationtest.py

import unittest
import sys
sys.path.append('../../system')
from annotations import *
from sets import Set as set

class AnnotationTest(unittest.TestCase):

    def setUp(self):
        pass

    def testCreation(self):
        a = Annotations('x', 'y')

        assert a.has_dimension('x')        
        assert a.has_dimension('y')        
        assert not a.has_dimension('z')        

    def testAddAnnotations(self):
        ann = Annotations('genes', 'go')
        go = set(['GO:0', 'GO:1'])
        ann.add_annotations('genes', 'BadGene', 'go', go)
        genes = set(['BadGene'])

        assert ann.get_annotations('genes', 'BadGene', 'go') == go
        assert ann.get_annotations('go', 'GO:0', 'genes') == genes
        assert ann.get_annotations('go', 'GO:1', 'genes') == genes
        assert ann.get_annotations('go', 'GO:2', 'genes') == set()

if __name__ == '__main__':
    unittest.main()