laydi/bin/mat2ftsv

#!/usr/bin/python

import sys 
from getopt import getopt

def show_help():
    print "mat2ftsv - Matlab matrix to laydi dataset converter."
    print
    print "Usage: mat2ftsv <mat-file> [<matfile> ...]"
    print 
    print "Description: For each mat file given as input, a ftsv file"
    print "    will be created with the same name, but suffixed with.ftsv"
    print "    in addition to .mat or any other suffix already on the"
    print "    file name."

options, params = getopt(sys.argv[1:], 'h', ['help'])

for opt, val in options:
    if opt in ['-h', '--help']:
        show_help()
        sys.exit(0)

if len(params) == 0:
    show_help()
    sys.exit(0)

from scipy import io
from numpy import ndarray
from laydi import dataset

fn_in = params[0]
data = io.loadmat(fn_in)
for key, value in data.items():
    if isinstance(value, ndarray):
        ds = dataset.Dataset(value, name=key)
    dataset.write_ftsv(fn_in + '.ftsv', ds)